Yang TH, Wu WS* (2012 Aug.): Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data. BMC Systems Biology, 6:102. (NSC-099-2628-B-006-015-MY3) SCI, impact factor=3.15, Ranking 9% (4/47) in Mathematical

Chang DTH, Li WS, Bai YH, Wu WS* (2012 Dec.): YGA: identifying distinct biological features between yeast gene sets. Gene, 518:26-34. (NSC-099-2628-B-006-015-MY3) SCI, impact factor=2.341, Ranking 53% (78/146) in Genetics & Heredity

Xu SSD, Ying H, Carbonell P, Lee CH, Wu WS (2013 May): Fuzzy logic application in control theory and systems biology. Advances in Fuzzy Systems, vol. 2013, Article ID 504728, 1 page, 2013.

Wang H, Chiu CC, Wu YC, Wu WS* (2013 Dec.): Shrinkage regression-based methods for microarray missing value imputation. BMC Systems Biology, 7(Suppl 6):S11. SCI, impact factor=2.982, Ranking 15% (7/47) in Mathematical & Computational Biology

Chiu CC, Chan SY, Wang CC, Wu WS* (2013 Dec.): Missing value imputation for microarray data: a comprehensive comparison study and a web tool. BMC Systems Biology, 7(Suppl 6):S12.SCI, impact factor=2.982, Ranking 15% (7/47) in Mathematical & Computational Biology　

Yang TH, Wu WS* (2013 Dec.): Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data. BMC Systems Biology, 7(Suppl 6):S13.SCI, impact factor=2.982, Ranking 15% (7/47) in Mathematical & Computational Biology　

Lai FJ, Chiu CC, Yang TH, Huang YM, Wu WS* (2013 Dec.): Identifying functional transcriptional factor binding sites in yeast by considering their positional preference in the promoters. PLOS ONE, 8(12):e83791. SCI, impact factor=3.73, Ranking 13% (7/56) in Multidisciplinary Sciences

Yang TH, Wang CC, Wang YC, Wu WS* (2014 Mar.): YTRP: a repository for yeast transcriptional regulatory pathways. Database, vol. 2014, Article ID bau014. SCI, 2013impact factor=4.457, Ranking 10% (5/52) in Mathematical & Computational Biology

Yang TH, Chang HT, Hsiao ESL, Sun JL, Wang CC, Wu HY, Liao PC*, Wu WS* (2014 Dec.): iPhos: toolkit to streamline the alkaline phosphatase assisted comprehensive LC-MS phosphorproteome investigation. BMC Bioinformatics, 15(Suppl 16):S10. SCI, 2013impact factor=2.672, Ranking 15% (8/52) in Mathematical & Comput

Yang TH, Wang CC, Hung PC, Wu WS* (2014 Dec.): cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila. BMC Systems Biology, 8(Suppl 4):S8.

Hung PC, Yang TH, Liaw HJ*, Wu WS* (2014 Dec.): YNA: an integrative gene mining platform for studying chromatin structure and its regulation in Yeast. BMC Genomics, 15(Suppl 9):S5.

Lai FJ, Chang HT, Huang YM, Wu WS* (2014 Dec.): A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms. BMC Systems Biology, 8(Suppl 4):S9.SCI, 2013impact factor=2.853, Ranking 13% (7/52) in Mathematical & Computational Biology

Lai FJ, Jhu MH, Chiu CC, Huang YM, Wu WS* (2014 Dec.): Identifying cooperative transcription factors in yeast using multiple data sources. BMC Systems Biology, 8(Suppl 5):S2.SCI, 2013impact factor=2.853, Ranking 13% (7/52) in Mathematical & Computational Biology

Wu WS, Wei ML, Yeh CM, DTH Chang* (2014 Dec.): A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. BMC Systems Biology, 8(Suppl 5):S9.SCI, 2013impact factor=2.853, Ranking 13% (7/52) in Mathematical & Computational Biology xx.Juang J

Chang DTH, Yeh CM, Wei ML, Wu WS* (2014 June): A metric for computing regulatory similarity of two genes. In The 11th IEEE International Conference on Control & Automation (ICCA): Taichung, Taiwan. (Invited talk)

Chiu CC, Wu WS* (2014 June): IMDE: an easy-to-use web server for missing data estimation. In The 11th IEEE International Conference on Control & Automation (ICCA): Taichung, Taiwan. (Invited talk)

Yang TH, Chang HT, Hsiao ESL, Sun JL, Wang CC, Wu HY, Liao PC*, Wu WS* (2014 July): iPhos: toolkit to streamline the alkaline phosphatase assisted comprehensive LC-MS phosphorproteome investigation. In The 13th International Conference on Bioinformatics (InCoB): Sydney, A

Yang TH, Wang CC, Hung PC, Wu WS* (2014 July): cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila. In The 13th International Conference on Bioinformatics (InCoB): Sydney, Australia. (Oral)　

Hung PC, Yang TH, Liaw HJ*, Wu WS* (2014 July): YNA: an integrative gene mining platform for studying chromatin structure and its regulation in Yeast. In The 13th International Conference on Bioinformatics (InCoB): Sydney, Australia. (Oral)

Lai FJ, Chang HT, Huang YM, Wu WS* (2014 July): A comprehensive performance evaluation on the prediction results of existing cooperative transcription factors identification algorithms. In The 13th International Conference on Bioinformatics (InCoB): Sydney, Australia. (Or

Wu WS, Wei ML, Yeh CM, DTH Chang* (2014 Dec.): A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. In The 24rd International Conference on Genome Informatics (GIW): Tokyo, Japan. (Oral)　

Lai FJ, Jhu MH, Chiu CC, Huang YM, Wu WS* (2014 Dec.): Identifying cooperative transcription factors in yeast using multiple data sources. In The 24rd International Conference on Genome Informatics (GIW): Tokyo, Japan. (Oral)